CVE-2026-31972

SAMtools is a program for reading, manipulating and writing bioinformatics file formats.

Verified by Precogs Threat Research
Last Updated: Mar 19, 2026
Base Score
9.8CRITICAL

Executive Summary

CVE-2026-31972 is a critical severity vulnerability affecting binary-analysis, ai-code. It is classified as Use After Free. Ensure your systems and dependencies are patched immediately to mitigate exposure risks.

Precogs AI Insight

"The primary vulnerability vector is rooted in within SAMtools, allowing a lack of rigorous type checking mechanisms. Exploitation typically involves an attacker attempting to silently exfiltrate sensitive routing topologies and internal schemas. The Precogs Binary SAST engine detects such memory corruption vulnerabilities to prevent unauthorized logical exploitation."

Exploit Probability (EPSS)
Low (0.0%)
Public POC
Available
Exploit Probability
High (84%)
Public POC
Available
Affected Assets
binary analysisai codeCWE-416

What is this vulnerability?

CVE-2026-31972 is categorized as a critical Memory Corruption Vulnerability flaw. Based on our vulnerability intelligence, this issue occurs when the application fails to securely handle untrusted data boundaries.

SAMtools is a program for reading, manipulating and writing bioinformatics file formats. The mpileup command outputs DNA sequences that have been aligned...

This architectural defect enables adversaries to bypass intended security controls, directly manipulating the application's execution state or data layer. Immediate strategic intervention is required.

Risk Assessment

MetricValue
CVSS Base Score9.8 (CRITICAL)
Vector StringCVSS:3.1/AV:N/AC:L/PR:N/UI:N/S:U/C:H/I:H/A:H
PublishedMarch 18, 2026
Last ModifiedMarch 19, 2026
Related CWEsCWE-416

Impact on Systems

Remote Code Execution: Adversaries may execute arbitrary code by overwriting memory regions.

Denial of Service: Memory corruption often leads to unrecoverable application crashes.

Information Disclosure: Out-of-bounds reads can expose adjacent memory containing sensitive data.

How to fix this issue?

Implement the following strategic mitigations immediately to eliminate the attack surface.

1. Memory-Safe Languages When possible, migrate parsing logic to memory-safe languages like Rust or Go.

2. Compiler Protections Ensure the binary is compiled with ASLR, DEP/NX, Stack Canaries, and RELRO.

3. Fuzz Testing Implement continuous fuzzing with AddressSanitizer (ASan) in the CI/CD pipeline.

Vulnerability Signature

// Generic Memory Corruption Vector (C/C++)
void process_input(char *user_data, size_t size) \{
    char buffer[256];
    // DANGEROUS: Unbounded memory operation
    memcpy(buffer, user_data, size); // size may exceed 256
    
    // SECURED: Bound-checked operation
    if (size \> sizeof(buffer)) \{
        size = sizeof(buffer);
    \}
    memcpy(buffer, user_data, size);
\}

References and Sources

Vulnerability Code Signature

Attack Data Flow

StageDetail
SourceMemory allocation pointer
VectorPointer is accessed after the memory has been freed
SinkDangling pointer dereference
ImpactMemory corruption, sandbox escape, Remote Code Execution (RCE)

Vulnerable Code Pattern

// ❌ VULNERABLE: Use After Free
char *ptr = malloc(256);
free(ptr);
// Taint sink: accessing freed memory
strcpy(ptr, "Exploit payload");

Secure Code Pattern

// ✅ SECURE: Nullifying pointers
char *ptr = malloc(256);
free(ptr);
// Sanitized state: pointer set to NULL
ptr = NULL;

How Precogs Detects This

Precogs Binary SAST engine identifies dangling pointers and complex use-after-free conditions in compiled rendering engines and system libraries.\n

Related Vulnerabilitiesvia CWE-416

Is your system affected?

Precogs AI detects CVE-2026-31972 in compiled binaries, LLMs, and application layers — even without source code access.